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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10000189 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 211163 |
| Total Scaffold Genes | 203 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 131 (64.53%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007640 | Metagenome / Metatranscriptome | 347 | Y |
| F012297 | Metagenome / Metatranscriptome | 282 | Y |
| F015941 | Metagenome | 251 | Y |
| F027271 | Metagenome / Metatranscriptome | 195 | Y |
| F032412 | Metagenome / Metatranscriptome | 180 | Y |
| F083995 | Metagenome / Metatranscriptome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_10000189115 | F032412 | AGGAGG | VAFTVYCWLLCLYPGSYRDEFGAEMTSVFRAARSELPPALPAKISFYQREFCGLLSGAMRARFDHLFGPAIPFGRFSMQPQFRFPRSTVFLMLVIFAGVVLTIRMASSVAGDKVGSVWPSLISVLVFMVLTMCAAAAVVCGILHTLRRSGVHRLENVDRRMYSGESNSDQ |
| Ga0212123_1000018918 | F007640 | GGAGG | MIGRIANTVLRRSRQQARPPRKVCPFCFEREHIGGYYHIPNLIVEICQVHHALLTEERLAAGAEMKRQPHSIKSVEMALRSFAVTVRAFATALNKLCEGLEFCAEKLNLHDKQAQRRDQRHG |
| Ga0212123_10000189199 | F027271 | GGAGG | MASDPERVKKLSVAGAFCLFDKKLSSSGSGSIVWGVLNALIGAIILNANNSWGFVTLLLGLALIAAGVYEKKVRDPKVIIISAATLGGLALWNFTLIGLAAIGKVHLALGGRTLYWGIAQAWGSYTTWQTYHTYKMLRETSDPATVEQVRGYIDELKKVRADESLDLVEFEMNAGFVQGRRLYRLKPTEDLYLIAQYKAQFRSLQLEGISFIPRNEVSLTPLGEKWMSKKIKATVQLGPLNLQNVTITPEMAMRINPAVRAVAMSAT |
| Ga0212123_1000018949 | F083995 | GGAG | MMEPMVNSEVRELCKAVSQEEDSERLKSLLDELLTALDERQLVASLL |
| Ga0212123_1000018976 | F015941 | GGAG | MKTNSKSKAFLALVLAIAIAATGCSAQWINIALQDLPVLTQMALNIATLVSALASGQQASTADIAVIQNISAQASRDLNLLQTLYGEYKATPSAPTLQKIQNVIADLNQNLPTLIQSAHISNPTLSARITAAVNLILTTVNSFAALMPQSSAATSRKAPTHSLLHANDLKKQWNQQVCSPSGNSALDAAFAAGVLR |
| Ga0212123_1000018993 | F012297 | GGAGG | MKSMHYLYAAYIATWVIHGTYLTILVRKYSRVRKEMESLRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |