NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000194

Scaffold Ga0212123_10000194


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000194 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)209756
Total Scaffold Genes181 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)134 (74.03%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004334Metagenome / Metatranscriptome443Y
F013309Metagenome272Y
F042195Metagenome / Metatranscriptome158Y
F089204Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000194133F042195AGAAGGMTNETILYLSDLATNSNSVLAALKATGCEVVSTNSATQAIALLYVLHTVAGVVLNRPAREQNTCELARSLQAIRPDVPIVLLCSDRIDRFPSCVDACVRTEQPLEKLTAAVRRLLTAKGFLVHSAQY
Ga0212123_10000194134F004334GGAGGMARIIEFYIPARFHKAMKWIPTTERGKVLEFPPEVRKSA
Ga0212123_10000194179F013309N/AMYRQKDADHYETIGKIPTRDGAGTSFWSPELDRYYVAAQATDKEQAAILVYAPQD
Ga0212123_1000019432F089204AGGAGMCFTENQEDRISIVQMNSELRHAELELLSAHCATHKLRLRFSTETVARHGRRDVLRKSIETAGALSEYYSSIEKQMLDEETVSAPATGLNDQQILQAVECVSSYLRDQRERYLPSAAPLGEQYQAMMRPYFSATLLDQVKVAELHGERVPNPPFYAEAKALGFVSLPDITHMNSLTFLDVLVFNEEVTQRSLFHALVHAVQFQVLGLERYTELFVHSFVNTRFHFRVPIEAHAFFLESKFARPAAESFSVEDQVRLWVKQNRY
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