NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000206

Scaffold Ga0212123_10000206


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000206 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)201798
Total Scaffold Genes197 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)153 (77.66%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023724Metagenome / Metatranscriptome209Y
F032382Metagenome / Metatranscriptome180Y
F049871Metagenome146Y
F058469Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000206116F032382N/AMRYQGSPPPASIFPLLARWRSSLQQNQPPLLAQALRTEAQRCFRLARGIASFELADELEAIGLAFQSEAEEIEEQTAPADEPVADELAAAE
Ga0212123_10000206159F058469AGGAGGMSAYSSWALICAILGCLGAVILLAWNTAQEQRAGRFDSLIAVVARSQSVVLFRAVAIARWTCIGVLAVAVVGLIRLVALGAI
Ga0212123_10000206164F049871AGGAMGEARRRNKLASGKQRPPLLHGQTPPPGTFKIENPLLIMFADQQGEVVCHIHPSEHCPTHETYGLLIADLVRHVARAFKVSEEDVWEWVDKERRHPTTKITNPS
Ga0212123_100002066F023724AGAAGVNRTLIASLFASLCLAFAAASANAQRPDDYCDALKMLLQSAKDGFTRAQNVKLPGANMCNIEKDTRSYGCIWTFDKSSIVGSGYQKAVQAANACFPNVSPKQSRSARGTLHTEYDFGKGEPLIDISRGRPGSEAGDWYSIDIVAP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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