Basic Information | |
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Taxon OID | 3300022557 Open in IMG/M |
Scaffold ID | Ga0212123_10000222 Open in IMG/M |
Source Dataset Name | Paint Pots_combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 193203 |
Total Scaffold Genes | 172 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 105 (61.05%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Banff, British Columbia | |||||||
Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007243 | Metagenome / Metatranscriptome | 355 | Y |
F027363 | Metagenome / Metatranscriptome | 195 | Y |
F034727 | Metagenome / Metatranscriptome | 174 | Y |
F079016 | Metagenome / Metatranscriptome | 116 | Y |
F087658 | Metagenome / Metatranscriptome | 110 | Y |
F103623 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0212123_10000222138 | F034727 | AGG | MTTDEVLDALGRYTRDSKESDRQTATKLGIGHPILADWLSGRTRPQKTTLARLAGFLRRAGYL |
Ga0212123_10000222140 | F079016 | GAG | MKPGRIETNSCAQELWGELIGIDDRTDQERTFTIYKRSGSLLVVSDTGCERLVGPDHGLSKTRIFQEVMYQFRVHAVRPNPSFCPVSD |
Ga0212123_10000222141 | F087658 | GAG | MPPAHYFQITLEPHLKHSGLATGRKIIFLAEVPVKTAREASEAPEDDRMVYETAERLAANLTCMAMTGESAQPGEDEMRISFRSISGMSYDVMQRHPDAEKDGVRIWLIGARPE |
Ga0212123_10000222142 | F007243 | N/A | VSHGEALIHRGEGLNSLLIMTSIHATILSAEKFRDLYRLIVQLVPSEFVGPFERLRFKKNPYCGSFGTSVDKSWLTLDYRKDPGFKAGEAFPLWRTD |
Ga0212123_10000222152 | F103623 | AGG | MSTNESVYPRWEREDRVSRFFIGPSLPIYQIEEIELIGGSMFLASESDKSNLVGQFESERNAKEACKRDFVDKNNDPATEPVGWGLNPRQKSR |
Ga0212123_1000022245 | F027363 | AGG | MSNTGTIKTLFENWLTDVRRRGAELYAENQADEVLYLSFEGKDQVRYSLRIDFDGQELTVQVNSPDLKSAKGESFLLNEESLRLLARRMCPLPEGQAVISVYLLARLAILCHAYQRLLAEYDREHHIQTTTNTIQEIEAELRQCLTPEEQQRTENPFLRPKGK |
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