NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000236

Scaffold Ga0212123_10000236


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000236 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)188675
Total Scaffold Genes159 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)125 (78.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000132Metagenome / Metatranscriptome1972Y
F000260Metagenome / Metatranscriptome1431Y
F004142Metagenome / Metatranscriptome451Y
F007011Metagenome / Metatranscriptome360Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000236129F000260GGGGGMNWKRFVLGVFTALAMMVATFFLPRGGLLRDASLVQFPMTVGIWAIFVLLFVKLK
Ga0212123_10000236143F007011GGAGGMKQLLGILTILFALGIPVLAQSDYPQDNYPRDRYPQDRDYNRGYAGQNRLSPEDQSKFNEEYDKWQRANSRNDRSDVDKHARRMEEIMARYNIPQDTPFNAIATANGYAPRTDIRDYQGRFSPDDQKSFDKAYEHWLKDTRKHDRDDVSRDENRMQEIMARYNIPRNVPYDALASGGRGY
Ga0212123_10000236158F004142GGALQQAQEYIATEVKCESLPEAGSDGRYRVRDFWSGHRAFEIFRERFSEDFAQFDRQIAEELIEKQEFVGAYYEADERE
Ga0212123_1000023670F000132AGGTGGMLIEKLAAGVVQVRTPIGPRYVMPSFRQRVYLVWMFRNFPILPHAVLNKRQQRMIDRMCSEQRFASMAYADGMDEAPVIGTIEHRPPIGAEQLSSRRAVTHESGSLAAEVRQRS
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