NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000366

Scaffold Ga0212123_10000366


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000366 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)152815
Total Scaffold Genes159 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)120 (75.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013927Metagenome / Metatranscriptome267Y
F022730Metagenome / Metatranscriptome213Y
F036374Metagenome / Metatranscriptome170Y
F092462Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000366121F092462AGGLVSLIEGEGRVRAALLLLVSVIVAGCSGDKPASTGSTISPETLKKECADPQWKEQNLGLWYSVCRQPLRW
Ga0212123_10000366132F036374N/AMETRRGKGESEPITLGQALAAHVRLIVRCKGCGHRADPDVGVQVAQHGSGMPVPDWARLLRCTECGARDADFVVSGTAR
Ga0212123_1000036666F013927N/AMKIHNGDVLIQRLDERRYAVAVDGVVRYVGSREECERRAAMLAPKNDRAAQDQALLRAARLSS
Ga0212123_1000036693F022730GAGGMALKFVIGLFESKGIAEDAINRLIHEGVSAANIFPMVIHETAPLPSAVSPAVEALSVDPLVVGDVRDTFAPFIRNGETAVFVRTHSEDEIDLAVATIRQYAPIRIRVVGSGEGAPLGHDI
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