NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000398

Scaffold Ga0212123_10000398


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000398 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)145357
Total Scaffold Genes127 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (49.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090803Metagenome108Y
F095042Metagenome / Metatranscriptome105N
F101596Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000398119F095042AGGAMASTSLPPQGYLTRRPERIFEPLENISSYPSHLVRWRECADSKFKLSSYVFIGQRTNNLPVRMAFVAGLRSHDDLAHRALAKLLVELEVAPLAGADYALFSYAVTREPSDEISEGFSNDWLDESSGVQPILQVLESDMASSDVDGFISIATNERVSGFQFETDSELIATEVAWPTLEVAGRFVPLAEEPVKVLPSAILRRQRGLGRGIPKQMFGLTLRTSEDSGPEEQIAAIVFSSIRVLQQYRRLRRAAVDL
Ga0212123_10000398125F101596AGGAGVNRIGCSISREVKVARDDGTFYLQRSTCSIELRFESEAQVFITVAWHTGAKLLGHGRKDWQAESLTKAIKELRDYSPTPEVPYPACLMDILAQLPLNVVKFNLDEKGGNAETASPEQSDIQRTSSAS
Ga0212123_1000039860F090803AGCAGMIVWLGLLTLTSCVEMQAVDVRPKSGALLIDSTDVLYLRGLLVQTAKEYGLEPQELASSDMIASYQGGKKGPFSAGIAFILLWQHPSPSRLEIDISGPTPIGATILSKRIFREVKAKLIEHFGSDRVRDVSKTVVNPI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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