NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000426

Scaffold Ga0212123_10000426


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000426 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)141059
Total Scaffold Genes132 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)94 (71.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000482Metagenome / Metatranscriptome1089Y
F000548Metagenome / Metatranscriptome1036Y
F099601Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000042610F099601GGAGMKYVFRILVAAALIWAGWQVLEPEITNLFFQDDLHDTAAQPAWRTGMSAPPSDDELRLAVIRKAWGHDIALDPKQVAIRRTGTAENPVIFIAVDYSVPVNLLVYSFKLHFTPASSGARF
Ga0212123_1000042646F000548N/AMAEKTSSSARWIGIPVRAVGVTFLFTLLSFAVALLLSILGTVVYSQVKHVAPNLTFAYRHIAFPCAIAAGSVVLVLSLGMEIRNYRQRKTLEGIERSS
Ga0212123_1000042660F000482N/AMLAKVSKVILPPAPSAAKLESMQVSRTHLAIALGTGGLIVAVFLGYLYWLSNQPPVLSRSDERDPLNQMPISITMNPFRDRTIERTANSFIGEMRDGNCRKLLAQWERDYRRKRADFVCNSESQHPLLKWNLVEWEDAPPLVILHYKGERYNGPSQDSTYKDLFSVTEEKKESGWTVTKYDSFY
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