NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000464

Scaffold Ga0212123_10000464


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000464 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)133839
Total Scaffold Genes155 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)98 (63.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000861Metagenome / Metatranscriptome857Y
F012293Metagenome / Metatranscriptome282Y
F019240Metagenome / Metatranscriptome231Y
F065479Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000464144F065479AGGAVADQPDQKQPGTTLAFQEALTQAIELWDKTPVSILDQQAVQTHALLLAMGKYITYRKEKGELESSADGSDFIKRLIKDL
Ga0212123_100004645F000861N/AMTRLPAQVMAIEERARQYQVVVQITTKYRGSFNTLAFGEIKPYSGSLKDGRLDLVYYLDPSLKAGDQFPLWTLQ
Ga0212123_100004646F019240N/AMEIERPEIVELFYSALISPNDTEPLSPFLSQRVEWILSAADPHTLGEELPSNAIKFSGKEGFRQLALYFRDSLHVISGDLTGCIPHHHLIFSFGRVRLQTREAGRLAETNIAAKITFRGSKIIKGQIRISWPLVF
Ga0212123_1000046463F012293AGGMKAKVFFALALSTPLFVSSAEAIVYTVRTDSGPVTYSLYVPPGTPVGGKIKPNPQVGYSAGFPVTPGSAEVVAVCWAAGLKEKDKSDNYPNSLITLGGTIPGGFYNAASTKPTSVQRINAPVPYYLVQMRGYVAGSAQTFYAAVLDDGNIVLPVRVSQHAYAPVHHSKEEASGSREKKKRKSASRVLGDRATSRAMGGAELKEGWNGSEEKPSN
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