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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10000466 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 133151 |
| Total Scaffold Genes | 119 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 96 (80.67%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001247 | Metagenome / Metatranscriptome | 737 | Y |
| F002358 | Metagenome / Metatranscriptome | 567 | Y |
| F005728 | Metagenome / Metatranscriptome | 392 | Y |
| F026629 | Metagenome | 197 | Y |
| F029199 | Metagenome / Metatranscriptome | 189 | Y |
| F043510 | Metagenome / Metatranscriptome | 156 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_1000046610 | F001247 | GAGG | MKTKTWTVITNTGKQADLACGLEKREFRKPAHISPKEFVHWMAPASHINDDSLESIFKR |
| Ga0212123_100004663 | F029199 | GGAG | MEVPRSATTKRHSKRTKAVVPVRLWIAGSKDIHLAHTLDVSRQGVRLGGYRGDMKVGDKIEIQYHQNQAQFRIAWITASKGSLERQIGAECLEPGKQVWGAQFPQEADQYEQK |
| Ga0212123_1000046654 | F002358 | AGG | MPVFINEAKAVESRVREEAQPPHEQVPALVELLKTRSYAEIRQRMYDREPGSPWWMACRAELDLRNGQQVGEASLAMSRTSEKMRASVQHFEQLTDTLHQATKDIGDLLRGTQEAGRRLEIAVYVAIGVTLVQFFNLIFEVFRKR |
| Ga0212123_100004666 | F005728 | GGA | VFGFSDLVSALPEGRQFPQHAWKKVFDAVFLDAAMQISSLLQIEAECHHGAPAKRIGPISDDTLGYLSSSSRSCCSTGCAS |
| Ga0212123_1000046687 | F026629 | N/A | MKILFIHPEDDPEKGPWAILAWDHIVDLGLGGVNAYARWSNKFRCPLTTLASLRNGFDDFRQVRHILGLGCGQLIDEHGLDWWEIMSSYLAEEVEALILLQRFARTIDSEDEVYVSRHGLHARLLQCLLATRTKVFPSRRGAKKGGLAHYVRASRRLSAPQIIDVFWDKYDAGYQLRGLLARKRIPSSRPVVLLPTAYVNVSRTSIAYANTFPDENFLLVSTRQSGRMRDLPPNVAGAWLSFYASVRDRSDENADMETRWRSLLKGLEGVAEFDTLRRLGYLHDFPRRFRRGVEVRDAWRNVLDTEPIEGVLCADDSNPYTRIPLLLAKARGLANIACHHGALDGGYVFKRCYGDVIWAKGEMEEDYLVRKCGAPPGKIEIGAPALPAACVRRQSSAQTFRANIFRSNILFISEAFDITGGRAEEFYRDILPPLADLARGTGRRLVVKLHPAESKPERANILGRVLSSEQRSVAHIVNGPLTEDLLASAWFGITILSTVALECAIRGIPCFLCKWLESQLYGYVEQFIRFGVGIGLHDPSEIKKIPQYLEQHAVRAEVLDRCWYPAAPNRLRQLLTSTQKSCNAAAG |
| Ga0212123_1000046695 | F043510 | GAGG | MMSESREIRLPADLCAAAEKKFGSTFRTVDDLIIFLLKEVLRRDTIDMDRADQAVVEERLRDLGYI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |