NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000493

Scaffold Ga0212123_10000493


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000493 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)129017
Total Scaffold Genes122 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (62.30%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002611Metagenome / Metatranscriptome543Y
F007807Metagenome / Metatranscriptome344Y
F024494Metagenome / Metatranscriptome205Y
F027943Metagenome / Metatranscriptome193Y
F053237Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000049316F002611AGGAVKAYKIERIKSGMKFTCTQCAHSVSTLDFDAKGGNLRTQAATAINDHARKAHSAPMIISPSDSQQRTWR
Ga0212123_100004933F027943N/AMGLIIVTVLVRILETMFVAGAIGSVVVLVLSGIEDLKLLFGREGQNHS
Ga0212123_1000049342F024494AGGAGGLKLKSLAVMTLLVLGCSAAFGQSFSLGFLGFNGTQYCDYEVVNVSAPYAAGTHNLTTVCGQPVDAVMVGFKANIPLTSGATVVGNVVEMADNTFDASYNAYTGCQIDWVTKTQPSKLLFHYGWAIYFSCSGGSDYLLNYGYLTTMLGAKAQVGAKKTSFGTLANAKAMHKQ
Ga0212123_1000049375F053237N/AMNNIGQYKPQAEPNRDLVECAIAEVLEIAQRQGITAADLIRMLDSGMRISDFLNATNVFARGGHTIDRDFS
Ga0212123_1000049385F007807AGTAGMAVALELHNTGDSGVGAEVRALVEHGLSDRPGDWRVSIVGSRENDGWEMKILGPNGFERSYTLAGNAGEHQPFMIGNVLLRLLPATMPQD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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