Scaffold Ga0212123_10001368

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212123_10001368

Scaffold Ga0212123_10001368

Overview

Basic Information
Taxon OID	3300022557 Open in IMG/M
Scaffold ID	Ga0212123_10001368 Open in IMG/M
Source Dataset Name	Paint Pots_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	68562
Total Scaffold Genes	77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	62 (80.52%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff, British Columbia
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022702	Metagenome / Metatranscriptome	213	Y
F080319	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000136825	F022702	GGAGG	MPFDGAGFGYSESLQKLDAVIDLIETPDRWCKGALRSHDGRYCIRGAIRAVSGAELLEPVILQAIGQVAGRRFRRIEAFNDHPNTTHDQMVAVLNRARRNLEAVPSLGSASRLRQPGTSMLAHWRGALLSWVHA
Ga0212123_1000136871	F080319	N/A	MGLMFKTILAACIGWGALYAAQHYWLGAMMDQVAEVSKKDFLPPAPAFPTMEIDPKKLQQAINPQLNIDTKKFERIGIESMVRQIDQQNRNALSQVPQPMSIPGLRH

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