NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10001887

Scaffold Ga0212123_10001887


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10001887 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54523
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (73.44%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011789Metagenome / Metatranscriptome287Y
F024668Metagenome / Metatranscriptome205Y
F033936Metagenome / Metatranscriptome176Y
F039750Metagenome / Metatranscriptome163Y
F072646Metagenome / Metatranscriptome121Y
F095804Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000188720F024668AGAAGMTAIGAKVVAVDNLGGRYRVIVRIGFPRYHGSFLTLKFGEQKPFTGFTHNGLLDLVYHEDPHLKAGQPFPLWTIQ
Ga0212123_1000188721F072646GAGGMIAKQRGEGAHLLDALWLRTLGDVTSLRSLGFQCRNIGQKIAEHEISEMIEYLEESETKRKSDRNWRPRPVIN
Ga0212123_1000188725F095804AGGAMRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGDQIKGMKLPQPENTSPTASPSATPK
Ga0212123_1000188726F033936GGAGMNIGVIDEGKRDQIDSRLSYSPSLEAAVNLILGDPAFVGDRATPAFKLLRAARFLKDSAPHVFQIDEMGTVAKNGMDRWLWDLLDQ
Ga0212123_1000188728F011789GAGGMKTLNAKALSVLKSQSYRTRDKSDNQTLIEIWRMHVSYPGLETVYEVELREPLRSLASKKYTVGLNGLVEFEMFSDPQVAAGDSLQIDAYEPGEMILGGGVL
Ga0212123_1000188733F039750AGAAGVDKKNTGNIEVRMVPEGTFAGTIQKPMLVKDGAPVPENTGDEGGGQN
Ga0212123_1000188757F033936GGAMLLGNSGTIDKSEYTKIDSELSYSPSLEAAMNLILGHPPFVGERAAPSFKFIRAARFLKENAPHAFQIREMGIPAQNSMDRWLWSLLDWNIDDAML
Ga0212123_1000188763F095804AGAAGMKTLIIFLLGLTIGGVAMLFLPDTRRDQFNAEIRTQTGALQARLQQFGDQFKGAKQPKTENNSPTPAPTVTGSS
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