NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10002376

Scaffold Ga0212123_10002376


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10002376 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45726
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (89.58%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014657Metagenome261Y
F021579Metagenome / Metatranscriptome218Y
F025365Metagenome / Metatranscriptome202Y
F063026Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000237624F014657GGAGGMKLLGYTAVVLLALTLAACSKKEEESEVVPPGFCKSEGECQPMADRQNAYQEDLRQKLISQGVHEQYLPCGKYKPTKAPNGYWAVTRDTSGCPPTASQEDPHPDLGNAKKSPH
Ga0212123_1000237638F021579AGGAGGMQKAHLYEAILLVNRGIDEAVRGLERLKRAKDSGLDPAYFDERFVLFEDHRARLNAYFCSNIQGREEQDAARLGKTYSKYEEEVLDEVQVYRDVQAVEERRRMEGKAPKVSFLSSDEQRAWERPYSKPPASAEGCAHADSGENDRG
Ga0212123_1000237639F025365GGAGVAKKRKPKVVWIGGTPVTPLTAKERRKIDKGIKNNYERFRRRYPEVHGKVVDFITHSIEDGTLYFSVRFKDKTDFSLRYACDMLVVGADFCDFKTGNFEMIREYMRPIPR
Ga0212123_1000237640F063026GGAGMKRRKPVPPTHHLKSAIRKIDEVAWKLNDEQIATSIAYVLAVSRGEKRHIRKLFGAQLTPLCDYAVRLEGKLTPKERRHAMRLTAYETEIESLHEAAQRLRSQMEASYLHQRRFEHGSLDESGERQPKVSRKR
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