NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10002621

Scaffold Ga0212123_10002621


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10002621 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41799
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (62.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001591Metagenome / Metatranscriptome667Y
F027602Metagenome / Metatranscriptome194Y
F050509Metagenome / Metatranscriptome145Y
F074609Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000262124F027602GGTGGMWETVDMAKRSLRILKRVSNIPSLGICESCHTQFSADPRQLGQAGVQQQFNAHKCEAVPNAVPSAKEAPKKEAPKKEAVKVDGR
Ga0212123_1000262137F001591GGAGMDRRKERRLNLELPVRIWGVDRMARPFAEMVRVRNISNHGAVLIGMRSKVQTGEVLDVQHGAARAQFRIVWLSLSGEAGIQALAMEPPVFSMSMGIGTGFPKIFEMVGTG
Ga0212123_1000262139F074609GAGMSDEIDMLCEECGQTFSAFLHEMADKNAKVVCPNCRASRDCNSPKAAEPVAGAQSVRRIS
Ga0212123_1000262140F050509GGAMSDDKIDLLCEDCGQTFSDFLHEMADQNAKVTTCPKCGKIHEFPSKAAKPGAPSLKKII
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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