NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10004901

Scaffold Ga0212123_10004901


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10004901 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24531
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F036810Metagenome169Y
F041733Metagenome / Metatranscriptome159Y
F045057Metagenome153Y
F045709Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000490122F036810AGGAGMSIQTSQDTGVFARASWLALAAATCKAIQLSIERRTFERKMETIVRAANAHHSCGRSPGTIHFKLLRTCADELCADFAQRWNVPPELLEAQIPAISKLKSLADPPAKPNPAPLVGLGIVAAAATFLLLGVLGGLASVGYHLVGGR
Ga0212123_1000490124F045709GGAGGVNLTPSQKGSFLAGIGLWVLIWASVWKADDIAQAMCIQRWFNSNRCLRWIGQHKSTSLLATELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLLLPFLEMLLRQKGTVIATLQQE
Ga0212123_1000490125F014894AGGAGGMVTQKRKCTMRMSIGIPGFSVYFEHHQVKPFIKDHSRKAKELFDERVVPAVLLGTCKALEVVANNTADAHDYLIGKLKTKQSA
Ga0212123_1000490128F045057GGAGGMRDASIRESLTQKQWDRIFYRCPGAWAGNKPEPNSHGSIVINGGNILAAIQYLNRQRLRVLYAKAPLPEIWCSGGGIILGIGLRY
Ga0212123_1000490129F041733AGGAGGMLAIKPDGKKKITFTDLLICGVLGAAWLPLGIVAAAGIGGYKYWQSKSEKWAEEYEKDHPEEVKKLKA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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