NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10005404

Scaffold Ga0212123_10005404


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10005404 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22741
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (57.69%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003396Metagenome / Metatranscriptome489Y
F015508Metagenome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000540416F003396GAGMPRKRKKKIFSAAKIVREMARERVGSPKPSQLVKAKTTKAEKYKPTLGKLLTDE
Ga0212123_1000540423F015508N/AMLIPAFGQAPSAAHKVDNEFVQQQFGKEFTMLPELAPVFGDLDGDGVEDVVIAARCKNPMLDEAQHDYKVMDPYYDFYGYGDPKVTTTFKEPDPARRGLAVLIIHGAGPDGWRSATPKAKFVIVNLPYRTLSVRKMKLRKRTIEAVYIEELGEFNESSALFFDGRKFRYVPMGGEMQ
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Institute for Fundamental Biomedical Research
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