NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10006136

Scaffold Ga0212123_10006136


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10006136 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20394
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022765Metagenome / Metatranscriptome213Y
F030260Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000613614F022765AGTAGGMQRSEDLVLTEAERDVRELEQHVADQHIRVRDLVAAGRNDDEMKAREGLFLLSDALEIARRWLQAERKTRDIQ
Ga0212123_1000613617F030260AGGGGGMGTMLVETGSIWRRIFLPDPVNSSEEQKAGLVRVLQSRYHKLCVGELYRIQGRPLREPIEAITLDTGMVLIGLSECLRSSSEAEKALRDILMLFFEALGISREVCKKINRAELDLRHQLKMLSLWRQNRQNAPLMPVLNVAAALLTRGDPQLHQAGHQAIARMARALLPDAWAIYSKTVSFFGYTVDEPRIPHAPEAYHRSPRGQIPHQRDPVHERLLCA
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