NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10009176

Scaffold Ga0212123_10009176


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10009176 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14642
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000281Metagenome / Metatranscriptome1382Y
F000465Metagenome / Metatranscriptome1105Y
F000540Metagenome / Metatranscriptome1043Y
F034999Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000917614F034999N/AVAVDFGPDARQILNALQEKIGEHPEIGAAIAKLEMALNDLAMQTGGLL
Ga0212123_1000917615F000281N/AMQNPVKERIGKLRDEIAQISAANRLYLQSGKKKLHGAAGDHARRLQRLQEILDELVALTDWKKL
Ga0212123_1000917619F000540GGAMAKKKAATIFPKLTEAEQDLLSHIQNGYQLETDSLGGNPLLRRLKDNEEMRPLSANRNTIKAMEQRGLISPGKSLRGWLA
Ga0212123_1000917621F000465N/AMRAVAIKKGSREKTTGFKEMGTLRCDGCGEEFFLGHNPQSVDKRVAEKQAKWLEKVLADDHQCDKKHPDRIELPN
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