NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10011130

Scaffold Ga0212123_10011130


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10011130 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12446
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016603Metagenome / Metatranscriptome246Y
F019342Metagenome / Metatranscriptome230Y
F040253Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1001113011F016603AGGMFSKVDGKLWVDKQNFGWIKVDGQVTQSFSMGLFVARVQRGSHIILEQSCVGDGVWVPKRLEVRASARILFLKTLDMDRILTYSDYSLADGAYSVSR
Ga0212123_1001113012F019342GGAGGMHKRFILLLGVFLGSHVLTAAQRPTPQIVPTQDQIAPTITMVPTVRVPLLAVPFLLPDNLGKPAAHFSYLFAGAYERDEGLDGLRSLSPMHEVKTLILTQSLLPLAQLWGGRLRLDGFTSTLHMQNVELGPSAGGGLRPQRQSYPGGPRSVDLYGVSLSFHFGRDVDVGRPAHAWRCLSRIVGTVLN
Ga0212123_1001113013F040253N/AMKKKVKKESGNATLAGVKEEMAKPRMSKSARTEEVNQGAARIVRGKLGKTKL
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