NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10012554

Scaffold Ga0212123_10012554


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10012554 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11316
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000274Metagenome / Metatranscriptome1399Y
F003795Metagenome / Metatranscriptome468Y
F006668Metagenome / Metatranscriptome367Y
F069141Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1001255410F006668AGGAGGMPAQQQYDSLDSKQRRELLLKIGETPEEAQILGQRDYVALGGWVKARLKRHLKHPKA
Ga0212123_100125544F000274AGGAGMTNIKFATGFIALCMFAGASSLATAQDTTKTTHKKTRTVTGCLVKGDDADEYKLTTAKGSAWEIKSDTVKLGEHVGHTVTITGVVSNAAMHGAKEDAKDEAKEHGVAKNATEHGHMTVTNLTMLTESCSK
Ga0212123_100125547F003795AGGAGMGYGNRDETERKSTRAGFVDARLEELRRRWENATDEREKTGVSEQIREWQSFRPEQSASSGRGH
Ga0212123_100125549F069141N/AMEADVRAAIKMLQGQGHTVRPYIRYGTLWFEIDGNMLATRKEMLELADGVYSLQELVELFARRDAEEESRP
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