NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10012578

Scaffold Ga0212123_10012578


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10012578 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11294
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001114Metagenome / Metatranscriptome774Y
F003343Metagenome / Metatranscriptome493Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100125781F003343N/AMKPSSWDKQLGLASPLKNAASQSDQTNNPSKNEVRNEAGLDVSHHARISQRGGEKLFFLT
Ga0212123_100125789F001114AGGMSGQRSFVSADPFHPDPYPQPRAAERALNAALVHAEIARSYEEYLEIFDEFYADDVEGSSEAIEEPIRGKARVRSLLSNFLVPLHAMAEVGGVSISVRETAIPGDVEDETHSAWTLELVGATGKVCTVSWRTFRKWNDSRVVLEHHYDQQQSGEPLAHGDLRFDVLEPDVGSRRPS
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