NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10024519

Scaffold Ga0212123_10024519


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10024519 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6561
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000192Metagenome / Metatranscriptome1666Y
F027913Metagenome193Y
F057547Metagenome / Metatranscriptome136Y
F062504Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1002451911F000192AGGAGMTANQVVLYFDRQEDALLFTLAASSVMSAEGPVRSGHAAVKVAEEICKASRITTEGCSEHHGKGGTIR
Ga0212123_1002451914F027913GAGGMSYSESRNHFEKARINTADAVTIEMLDGLKHLSHAIEEDVRTLEQHIRNIQESADRYRTHSLPVEIVGKVSF
Ga0212123_1002451915F057547AGCAGMGKGRPCATVACSFIALAAWVRRLPFWLLNSSVVTECLQSGHLNVAKPFINLMV
Ga0212123_100245193F062504AGTAGGMYTIGRVPEGVILTCQDCTHIEHVSHFSLSLGSQRTQAAQAMQAHSRHEHNTGPLLELLPNKYEVLASAAVSRHMWIFDR
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