NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10027062

Scaffold Ga0212123_10027062


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10027062 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6080
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000410Metagenome / Metatranscriptome1170Y
F015125Metagenome / Metatranscriptome257Y
F066997Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100270622F066997GAGGMPHGAASSLQGTVEKIIIKPMIPGEAEKVQISVQSGSDPNQRIRIANTLTDARGEEVPLKKGAAVHIVIRPKSKDTIW
Ga0212123_100270624F015125GGAGGMTDQDTSTSQNIKYPHWRREFEAALREGDPESLRQRVDAAEAALFLRSQALVGSAEGHAERQAISDAIGTLRAIQREKLGYPD
Ga0212123_100270625F000410AGGMPRKLVWVEQGRFRGFACSECSWRFEPSAAPTGKSFDEMMQNFVLQRDKEFTSHVCADHPRTKRSI
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