NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10030713

Scaffold Ga0212123_10030713


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10030713 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5527
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012046Metagenome284Y
F015514Metagenome254Y
F017541Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100307135F017541AGGMKLLLFQQMVELNRSFDEVAAALRRLESVPFFQRELIRHALSDVEIARVYANREFFDNFEKIIEDDARWAYRFQRKFSERLKDRDDIYLEVKSSEERRKRKGLSPRVLILPDWDMSDEDRFDEDQARRRTKAAARKRRTQSKSKGVRR
Ga0212123_100307136F012046GGAGMKKSHVPSAAVPKFVPGKRYRGVQGKVVHWVEHTFEEGLLYIHIRFTDKTELSWRIATRMTIEESDLADWTSGDFKPLQVFVRNERDRSM
Ga0212123_100307137F015514AGGAGMHRNVTRAYDYLKREHDRIRAAHVKILAQKDRRLERRLLRADLESSRHLDEMLLYEERLPRPQRRRVLDLNRYGRKLERIMGALLNL
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