NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10079426

Scaffold Ga0212123_10079426


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10079426 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2778
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000586Metagenome / Metatranscriptome1007Y
F015781Metagenome / Metatranscriptome252Y
F020609Metagenome / Metatranscriptome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100794261F015781GGTGGMVGAPASSEAQLPSRILEIRPEESKLVCVGADGREFALSRLVGSNVRVGDELLEPASAGTAIADTEIYIRKPSLRRADVYQVKAGYAALPKMDKREEPFVRVQVA
Ga0212123_100794262F020609GGAVPIVSSPFHFQIRRRNWTNPESAYAADDRLSLSAISLEEQTARFRMLGLLDARILNPRVPEKRVQQIRKERDELERIYEATWLELENAIGGKVAEAIRRSLETMREAGAVQLELPLEKKRNFDLEGEARCNQ
Ga0212123_100794265F000586N/AAIEPLVALYFDDHIEQVEFQDPSVLEHFDVRTVRSFDYLRTLVRIKNPQAAMITLDVQMGPLESDERDVLADTTAIFLMLDSPLLTIQVLLPYTRCGGRTAVSNVHYTEIPGDEGGTPCPLFKIFSDVHVAVC
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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