NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10128653

Scaffold Ga0212123_10128653


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10128653 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1997
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020232Metagenome / Metatranscriptome225Y
F045388Metagenome / Metatranscriptome153N
F066033Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_101286532F066033GGCGGMTTQSRAFLQRILQRRTNWARSSERCGCPRCHAKYAVIRRQTPPGMIPTCEDCDQEFPPTEDGEWLVYERADA
Ga0212123_101286533F045388GAGGVRSSQLTDDALWRVIADNTDAMSVLIEKQFELDGEAGTPDPDTRQKLMLFNVQAIDNYNRQYRDCIAEIRRRYPSI
Ga0212123_101286534F020232GGAGGMAEQPAKPIPPDFAEAFAYAVLVYGIWTPQEPGRLIQIGSRYYTIVEVCRFVDQFTDRLPERVYLKLRSYLYDYPDAKLKADLAADPSYATAVRCLRGMIERRNEDYKQRGGKEG
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