NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0236341_1001734

Scaffold Ga0236341_1001734


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1001734 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11942
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006979Metagenome / Metatranscriptome360Y
F008806Metagenome327Y
F009327Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_100173415F008806GGAGMTFLLSEDEALRNLLKDMVVTDQKSNATGVATRAVKVYFGQPDQELRDQTYPYITIDMIDISEDTMRAMRGKVAPSYISDPSNMTPSLDFDPTVHGWEIDYPIPVNIDYQVTTYARQPRQDREILAQLLYTKIPLRFAVLETNDNTVRRLDVLDISKRDVTEQGKRLFVNALTVRVSSEIAPSTFHVMYKALQVSVTGTNGGLVRGRTNPTFTPIDSFTHTAQ
Ga0236341_10017344F009327GGAMRGSKVQGRFKIDFEHLSINEGIVDELRDPVGSIVNWYLWDAQFFADHPEEVVDDIYDVSSQITNYGRRWKAPFEVPVIMAQQLRGTNVMNERGFYTVDTLRLVIAVEDVTRLLPALLGSPNVHIKDRIVFQGEVFVPTRVLPRGRYANNYSVVTLDCNQLNSEELVNDPQFQAYVDTATPPQGSISPGGIGNSVDGGSPTTVTFDSMLNSGQI
Ga0236341_10017348F006979AGGCGGMAKKIKAAGEIHTIKKNKKGDIIVDHPGNKGPWDKINLTKKAGAKNIQQGVKAVQKYHRTTGK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.