NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1005995

Scaffold Ga0236341_1005995


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1005995 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4980
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016247Metagenome248Y
F051683Metagenome143Y
F055446Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_100599510F016247AGGAMSHFIVEHNYKGKYVMETICGVEDIDVSRFEDLLGVWVCDSMEELQTMENQIKELRDARSSKSS
Ga0236341_100599512F051683GGAGMILELDDDFADEITRSNLAQSYVNVSRMMKNGNNWHEDDVASWEKLLPALEIVGGWYSTDFKADIKKAKKVKNESKD
Ga0236341_10059956F055446GGAMKKKKYNYYKLNVGFFPDIVKLCFDDKVFQQILKDHDVTLKASALDCGIAETHLIGDGKDAIIILVFDMSLVNDNLSELVDTITHEVSHAVDHLAEHIGESDNFVNETRAYLSGHLAGQIFKICMHEKEKYARKANRKILGKASKRKPGPDVQVDQHSLGGAGSDSIPKQPSVPSGTENIEWGIIPEADPGV
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