NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1060975

Scaffold Ga0236341_1060975


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1060975 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)929
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015062Metagenome257Y
F016247Metagenome248Y
F051683Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_10609751F015062N/AYYSMKIKTQIKHKINAVAPRLSDEDLDPIEQDEQDNLSMFVTEGWLPWDPEDIEDIKRLIVEKMPFKQQFVITSFLDGLSYHDIAVSEKYWRYHFAKAIEFIKKELKV
Ga0236341_10609752F016247AGGAGMSHFIIEHRRNGDYIMELLSGVEDIDASEYSDLLGIWVCDSMEEMLIMEKQLQEMRHGHKRSSQPA
Ga0236341_10609754F051683AGGAGMKLELDNDFTDEIIRSGLAESYVSVSSMMKNGDAWHEDDIASWEVLLPAMKIVGAWYSVNFDADIK
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