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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022594 Open in IMG/M |
| Scaffold ID | Ga0236340_1002254 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Laval University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8174 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | SAS2a, Kuujjuarapick, Canada | |||||||
| Coordinates | Lat. (o) | 55.1491 | Long. (o) | -77.4866 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000857 | Metagenome / Metatranscriptome | 858 | Y |
| F004695 | Metagenome | 427 | Y |
| F010616 | Metagenome / Metatranscriptome | 301 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0236340_100225410 | F010616 | N/A | AQVHFFGATNMPHPLDPQSDKKVYIEFRKYENGLITYTITGPVEQIAVGEKKNRYGQTVPEKYSWIDPRTPELVMRNADGTFTKEGRGLHTYCVGEKGSGIWSMIDRDMVTVTAKNIANPWA |
| Ga0236340_10022542 | F000857 | N/A | MGICMELNLNNEEAKVNEDYYTKGNLEAGIEGVLRRNDQLYNEVKSGTWSQTFKTKNLDYKIGAEGGARYVQYTQHNVEAIKQYCKERREFYKAIGTTDNPFFAGTFEAMNLPKAIAHSICSTYFNNRPWDLVKTDKKDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK |
| Ga0236340_10022547 | F004695 | N/A | LKARYKGYDMLDKQNIIVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRMSDYHYLNIPVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPNGKINFEFERFSEADEPGARQAAKMALHFLNSKNDSYQFVRDWAQDALLHKSGVVMVSPVREQITQYKEVEGTKDNLRSFEIMAAEKGLTAKRQQMRRIDVDLQGVAQETMMPDETGQPTEPSPEEMNDAIKAHTIYRAKYKLTGYSTNIQVKHVAQHYFVCNPTIPGIRKQDFCGFYDPMTIHEAKSQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRFSRVVMITTAWLRRDIDNDGDEEIIEVCYSGSYILYIKEVDFIPLAVMVPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFAMQASTPRIGVNPEFIDAEEIQRGVSALFVLDRKFDPAKHIYEFQAMEGNLAYVQDAMQRFDQDTSRMLGMTNPADTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLKDLIYIVWKTMIQYSDDYNMQQLAEAMLPGTGFLDAKSMENFDFIDRNMINIDLALGFLSEENRLTRQQLITQAQAQFAGLVAQLDPSVPELFQKARRPFEDTLYALGVKNCDANMPTF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |