Scaffold Ga0215180_1027932

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0215180_1027932

Scaffold Ga0215180_1027932

Overview

Basic Information
Taxon OID	3300022598 Open in IMG/M
Scaffold ID	Ga0215180_1027932 Open in IMG/M
Source Dataset Name	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C1 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1286
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Acroporidae → Acropora	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location Name	Panama: Bocas del Toro
Coordinates	Lat. (^o)	9.1956	Long. (^o)	-82.1254	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006175	Metagenome / Metatranscriptome	379	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0215180_10279322	F006175	N/A	MYNKTIITFASCDIQNNQDPGNGYQPQLSASVDNAYLNLDYSGCLKNIIQELFVIV

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