Scaffold Ga0215181_1011639

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0215181_1011639

Scaffold Ga0215181_1011639

Overview

Basic Information
Taxon OID	3300022599 Open in IMG/M
Scaffold ID	Ga0215181_1011639 Open in IMG/M
Source Dataset Name	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C2 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	658
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location Name	Panama: Bocas del Toro
Coordinates	Lat. (^o)	9.1956	Long. (^o)	-82.1254	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F096614	Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0215181_10116391	F096614	AGGAG	MCPLPDSRCQAAEGVLPSIADLLLNVLSYLRAASLSQLLYSSHEAELWVRMYLPALVDKRGWGNADLSANPLSTLHLSEMWDVLANVCSPIGVNFMLLRHTFYGTMLELQLSPGSTLAHFNFRASDEAAPMWCRGSFAVRGALQCGKWTDELRQRPRRTPITQDSLAKQSSYRVEHCGDRFVLRPACKRWSEASNLGAS

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