NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_100503

Scaffold Ga0248169_100503


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_100503 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61586
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (32.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009382Metagenome / Metatranscriptome318Y
F009453Metagenome / Metatranscriptome317Y
F010014Metagenome309Y
F015306Metagenome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10050313F009453N/AMATAGTLLSDLDSKAPVVSNDDDLVNKILADMNMPSSSNPIMTAPPPPSGNGSRMIQSPNPNTVYPMSNDPATATAHMIGKEYPSTADFANLMHAPSYSHGGSAYASVAPQQMMPPPTLVESKGNLYSDILSQIKQPLLVAIIIFLVSLPFLNVLIGHYVPSLLRIGGDVTTVGLAVKSIFGGFLFWFIQKVLVPLMTV
Ga0248169_10050326F015306N/AMSRSINSTTPRFEKQKVPRFRRLDNDHISAIESLFQKFPFLRERVEIHMPFHRAKPTFSSGTVWLWPKFDKRPVGYLIFMDGFAPCIWYPERQEGMTFRWMLPPTFCQYGPTVCLANILSGESVLQIEDLAIWEGKDLWSNKVFSERWKSLSEFWSSLPADQPLLAFQPQIVQPIALKDWSLHYNSAIYWIIQPDHCRQPRWYWKDTVTVPDHPQVEFVAPQLKRNHEIVSTLCAYCTPYTKSVLPDTYSLLSQEQTPLGFASIGTLQLSLELRKRFADKIEGLPVEVTWNDNFKKYQIVRILPDNTPVATAGFFHHLHSA
Ga0248169_10050346F009382N/AMEEYITNEFTKDTYPNLFTHPSFGTEYRGAREASLGSVKDSYPARDSRYPARAAAVEDGRLVTDYRPQCSKNVRTGQQFYTKKWMISHGSELMDESRRRQVEWTGAALPMANTMPPPAAVVHSTPFYSEVNPTNLLGGLGVERANATCPPMFGAFSYAPTISEMQNNRKNIAVTSREEGGRNSKRGQF
Ga0248169_10050360F010014N/AMAQPVYPDLRTQSAVQSFPLPQFIGRTRREYDTKDSINARQFEHWQTDGKFMDNGRPDMNRQAPFYDMAPNVSRTSERSFRSQPRYDVEGERGGQNSFFDKYDTSSDSRNMTRELRASVYEDKNTGYTKESNKLLERNFDSRWLDTNVMKQQAQAAEELRPKMDDIRLFYLNKPSNSSK
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