Basic Information | |
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Taxon OID | 3300022602 Open in IMG/M |
Scaffold ID | Ga0248169_100820 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | U.S. Department of Energy (DOE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 46566 |
Total Scaffold Genes | 82 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 58 (70.73%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000652 | Metagenome / Metatranscriptome | 959 | Y |
F008554 | Metagenome | 331 | Y |
F023104 | Metagenome | 211 | Y |
F029334 | Metagenome | 188 | Y |
F034037 | Metagenome / Metatranscriptome | 175 | Y |
F052344 | Metagenome / Metatranscriptome | 142 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0248169_10082025 | F034037 | N/A | MAGVNICMYANPRDYFPDQHNFEFIADIQWPGTHGQQLDWITGVTSIEHWLLNYTGPKHQRWAWHWAQECYHVGVAFKYDKHRTLFLLTWT |
Ga0248169_10082034 | F029334 | AGGAG | MLKELDTKEAGIFAFAAAMDAQRRNSNNKSLYSQEQVRKAVTARDLIDTAFVYTKLYINYRKTFIAVKAEGARRKDSMAREVLALFESNGYGVVSTPQGLIVRIDK |
Ga0248169_10082039 | F052344 | N/A | MAFIQYEVWIIRDQHEELIECVPTLREAEELAENEREFCDEVYILEDQDGDLKEIRRYQG |
Ga0248169_10082049 | F000652 | GGAG | MTGFESKRASALAKLKGAGMKKVQVQTLLTQELEVPDDWGREEVYDFLAEFQSFRTAFQGVSNEDQTARIVDLGVISEEVTEMGDEAYDD |
Ga0248169_10082073 | F023104 | N/A | MNILNLRFEFTNPFDRWDYFKNLGCLHGDMGMYKAWELEHTYYSPLLLDCELSLTHRCDHPGFEFGIGILGYGIHFRIYDTRHWNYDLNCLEERDYSEYFEINH |
Ga0248169_10082079 | F008554 | N/A | MTLEDEMIEQAAKQMSNELDREILWGMLQGMGWTRVMLPRLIDNHHAIDITYWLEDNCKHSYERNGRDFIFESQKDANWFILRWGTE |
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