NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_101343

Scaffold Ga0248169_101343


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_101343 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34694
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (88.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008414Metagenome333Y
F048853Metagenome147Y
F096159Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0248169_1013431F096159GGAGGMKVVIEVDIPDGWSIPQPEDVKRLVDPDWIASWWHIDDVREYYAGDGKYVELSDEECREVLRLAEKYHDCDVGICWDSLNVWQDQVFKQREKETV
Ga0248169_10134321F048853AGGMDKRTIASWKLAIIWSDGKTEGLGSCLPDYIYDELMAYFAELEDLREEHDLDLREDDYHFEPTE
Ga0248169_10134367F008414AGGAGMSQVIIYANSNGGVSVCVPTGELPINEVLAKDAPAGAIIVDDFTLPQGADSVFFDAWKLNGSTITVDFPTAQAHKLRDFNAAAVQVAQKRQLNTLAGIENTPNDATFTTELTNGRAAIAAATTTAQLVAIANPV
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