NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_103205

Scaffold Ga0248169_103205


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_103205 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18913
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012096Metagenome283Y
F043202Metagenome156Y
F067259Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10320514F067259AGGAMKKLTYLDLEDKIIDVEQTSRDLDLFYKHHGDSPKVMTEDEVSNTLLGLKMLHDMRCEALYDMFNRVFELNQYCTDPEKLAARERLMGTFLKQKGKKK
Ga0248169_10320524F043202AGGAGMAKKQRPYYTADTGFFGAKVRICFSDAAFQEALKDNKITTRHNALDIGIAESHFIQQEGTQHSMLAIAFNFEEMAKEDTLDRMGTIYHEVSHTVTHIFQYVGEDETKVGDESRSYLGEHLFKQVFSAYVAEENKRERLRKRDRKTSDEKSQAVVGALLQVAIKRNGGAGSDSISEQANLPSGTKNTKRNT
Ga0248169_1032057F012096GGAGMSAWLVGAMGMIYFYVACEQLYKGSIGTAIMFFGYAFGNVGIVLQVK
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