NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236337_1117936

Scaffold Ga0236337_1117936


Overview

Basic Information
Taxon OID3300022653 Open in IMG/M
Scaffold IDGa0236337_1117936 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Winter W1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2106
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068263Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0236337_11179362F068263N/AMAVGPEVYRAVAESDELSSGDIAFLSLARTRLVGETPPGDTFDPLGRIPAYPRPTLLPLPHGREIALDTMFALVVAHSCEIDRQKNMGTAADHFDCRLTVAPIVPEPAVHLVGPAGNDQSVNWAAIEANEPVGSLFLPPIPDVSLFAPGVDSLPWPRSFADLRGLVTVSRGMIEADRLFGVAPEYVGTLQRQLARFFTWRDLARHELVEALIGRRVVDAIPLNTKGDRLRVALTADDGSSVTIELRAK
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