NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242661_1025484

Scaffold Ga0242661_1025484


Overview

Basic Information
Taxon OID3300022717 Open in IMG/M
Scaffold IDGa0242661_1025484 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)986
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015894Metagenome / Metatranscriptome251Y
F016330Metagenome / Metatranscriptome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0242661_10254841F016330N/ASGYRQVFVRDTCLGTANCTPKTTRISLQPGDGSGTGTSKRAGPAISGGASHVGLAGSSTATLFTHSVAVDDDIFLALTKNQQ
Ga0242661_10254842F015894GGAGMGKGSVSGNSSSSKSLMWMMIGLFAGLAVLLGSALFFASRAVRSMGLSAASAKDTMRTPGGSFRLEKETEVGPGLPLYPRSALVVPDDDTAATSIKEAQNGIETSIYHTTDTRDFVDSWYTKHLSPEFTRRDAGEKPASGILSGTRVSDNDIAFVAEREQMVRIVALSLDSGGTKISFIRFNRTAPASVEAPAAAPPTATP
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