NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242672_1000630

Scaffold Ga0242672_1000630


Overview

Basic Information
Taxon OID3300022720 Open in IMG/M
Scaffold IDGa0242672_1000630 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2432
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046526Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0242672_10006302F046526N/AMRMRYAVAGLFFALLCSCSPVPETEFALASVTTATARIDAGLAAVTVEPASRDRAVYPLPRSLTPLLPLWQAALQDAVTRQGIFRPEASRRLSLVVKVLEFSLSGNILSVFARYQLFDVPAGDPVFSADVMSNVGLSSLATGVTSLDDPTAATQNRTQVIRAIQDNITQFLDRLEAFARQPRGAAPPRP
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