NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224569_100374

Scaffold Ga0224569_100374


Overview

Basic Information
Taxon OID3300022732 Open in IMG/M
Scaffold IDGa0224569_100374 Open in IMG/M
Source Dataset NameSpruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3799
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006757Metagenome / Metatranscriptome365Y
F044385Metagenome154Y
F098478Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0224569_1003741F006757N/AMRNLAVLPPIKSNARIALLDLTTFQDISTPDLIAMAQAMPGGTKVQIPDRLTAIVLILGTRLVDTD
Ga0224569_1003742F044385AGGAGGMLIRNNDGEVTGEMNVSITQDGTVIRTNTMYQNGRPVTQNISIRDTQGGVRTTNVIGGKILP
Ga0224569_1003743F098478GGAGGMSKAKNGKAVDVKKAAAGDKPELNGNGKAEKTKAVKIQTLTPANTKLVKRGFVKMFVDFVMKRGSVTTDVLAAEFAGRQVEGKKITKQRVLRYAHWCVNKGVLKAR
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