Scaffold Ga0228710_1041255

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0228710_1041255

Scaffold Ga0228710_1041255

Overview

Basic Information
Taxon OID	3300022740 Open in IMG/M
Scaffold ID	Ga0228710_1041255 Open in IMG/M
Source Dataset Name	Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1341
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Nodule → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.0136	Long. (^o)	-118.4673	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031773	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228710_10412551	F031773	AGG	MVGWEHSPGNLFGLTKKSYVPRVAQRFNRKNFFCNSCFYVFMTIYFFLISISNCSLDFLSIXGDRNTIYKTRDSGDQKIESLCVSSWSSLYNFFLAYTSSCSIHQKHPAAPQNGPNHHPSRLSTGVLIRLFPSPEIQVSTGKDLLISRGXAGLEASYLSPI

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