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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022746 Open in IMG/M |
| Scaffold ID | Ga0228701_1000397 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37625 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (79.66%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9255 | Long. (o) | -83.5226 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F002085 | Metagenome / Metatranscriptome | 595 | Y |
| F011148 | Metagenome / Metatranscriptome | 294 | Y |
| F012668 | Metagenome / Metatranscriptome | 278 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0228701_100039717 | F012668 | N/A | MAIARYENFIFNNVINAIDDYGQYTTTLTKWFETRGRVADVANSLRISDRYRVYQDLVNITVNYTPNVRQIVDNQNLYAINWRGFDWRITDIRESNDRMKVTFLCYRNDPATTV |
| Ga0228701_10003974 | F011148 | GGA | LAVFNKNSITQVSGFNNPCITGELVYQQQTYWNLVLTSEDGITPVNLTGATIDAQIVRRTLSNVQDTRYGLSFDIGNYEPTPTPIPLTITNRDDATGSFTLVIDDNSWDLVDTDAAMAINSANGAGFSGRIKISFPQVSGTPPEDNIIFLLFIVRSDGIVKV |
| Ga0228701_10003978 | F002085 | N/A | MNVIAPVVGTNNIRIADFVRVNTGVDIYRFTTAPSDTFVPAVDSTAFNAVGTLMKVGDVQRDIKSTANETTVTIVGIDTALLGWVLGQNVKGAQIQMWHGFYNTDDQLITSGGSGGLYQFFSGIITSFTISETWLESSRSYVGTITVAASAIQLILQNRIAGRYTNDNSWQFFNPGDTSMNRVNFIQNINYQFGKDI |
| Ga0228701_10003979 | F000934 | GAG | MSLQNILSISESVGINDQRFVGQTISRNQKITTSEILTVVPFAFELKPMNYLRYSQSRGILNSLRIPDKALTQYLNFGSTGWVNYIKYQGSMTPLQIAACQWQTSSAAKVLVLGSLPAISSTAYLFKIGDFVQVGLYSYIVTADVLRGSGSTVNVPVHRSLISALGSTVACVAGEFGTTVSMGGSTYTGVTFPVVLRDYPTYTLVPITNDSYINWSGSFKAFESVL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |