NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228701_1018072

Scaffold Ga0228701_1018072


Overview

Basic Information
Taxon OID3300022746 Open in IMG/M
Scaffold IDGa0228701_1018072 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2309
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010746Metagenome / Metatranscriptome299Y
F016115Metagenome / Metatranscriptome249Y
F020860Metagenome / Metatranscriptome221N
F035200Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0228701_10180721F035200GGAGMITKFIVLRDGIRVSEDMHERMEDAEYEANHWREIIRRWPDGTKVTIKKIGG
Ga0228701_10180722F010746N/AMTYKCAVSGEAIPPERVEALQVLGVPEALWTKKEYSQTRKLKAVYAGDDGSNDIVICDNVDGGSLFDNEIVAELENDN
Ga0228701_10180723F016115AGGAVKRDGDIAIYKKQLDDGESENYHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAYTCTSIEDANKRFDELQEKLTNYNATAVLPSGEKRGRGRPRKIA
Ga0228701_10180724F020860N/AMNITKVKKLAEGGYAIYATDPKTKQEAQVGYIGENLDPKNWLPAGTKIENS
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