NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228702_1005302

Scaffold Ga0228702_1005302


Overview

Basic Information
Taxon OID3300022748 Open in IMG/M
Scaffold IDGa0228702_1005302 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6008
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F003422Metagenome / Metatranscriptome487Y
F038643Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0228702_100530212F003422GGAMSVGSCIILAMTKYSKYTWVCTGTCDALIEYTFKDNYILPNLVQCPCHSMCTLVSVEDATIQPTTTEEEKMETATIGSDALHSPEVEYNPNLLVTYKVLHGYSDPEYTTSKVTSLEWDLHNGRQSQKRVGLLESNINTVKNIILESYADSEDQETLQAIAEALGIELTKDVEFTATIEVSGTITLNLLEDYDLESEITDALYVDANHGNIQIDDTEVCHVREAY
Ga0228702_100530214F001043GGAGMSDYKDGFDDGYKFAREEIMEKLAEIDIMDIDSWILDRISEMIEGGKL
Ga0228702_100530216F001125GGCGGMGDRANFGFRQSNENIIFLYGHWAGHEMLSRLAEAVAAARPRWSDESYATRIAISQLVGQDWNSETGWGLHVNEIGDNEHKVPVIDWTNQTFTLYEEDIETKVFSMSLLDFCTKYSQLIM
Ga0228702_10053023F038643AGGMKDMTRWALFPFTVDGVEFVSKLDIEGSMYQRVTKVPAHVFNAMNEGAIRELVGKVSLMSRDEIQTQLDRVNEGYSQAYIALA
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