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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10000061 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 121633 |
| Total Scaffold Genes | 174 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 149 (85.63%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F040628 | Metagenome | 161 | Y |
| F041160 | Metagenome | 160 | Y |
| F065782 | Metagenome | 127 | Y |
| F067675 | Metagenome | 125 | Y |
| F073469 | Metagenome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_1000006114 | F067675 | AGGAGG | MALIITRPTQSTTFNDGTGRNAILRNDSGQHFLVSEVHRTPAPGHRIDETLVFPCTAEGDVTDWCEVWSGNSVEDVLSTFNG |
| Ga0214917_1000006116 | F065782 | AGGAGG | MATRSVIGYIQEDGSFLGVYAHYDGYPSGVGSNLLKMNPDDIKTMVTAGIMKGGIRAINSPDLAEVEYFEEHWPEACRTQLPGGEEYDYILDTDGSLTCTDSQGNDIPQDQWRR |
| Ga0214917_1000006126 | F041160 | AGGAG | MASKNVKVIEVSQVDGKLTVVGTVGETPFTASPFQWGSKMLMKVEAEGLDRGSRIAIGHAAKKALKVAELALPEAVLKRPRKPKAEPVQAESAEAVVESDVELTTLDEALTES |
| Ga0214917_1000006137 | F040628 | AGGAGG | MRHFIFLIGSTDDFESLEDLKNTYFNGNDTYRNMSVFPVSLSEVCQVAGYDTLEEIATLIGRGEAMTEGWCLDDTLSTLLEA |
| Ga0214917_1000006144 | F073469 | AGGAGG | MARSLKDVNSKHRVKRTLETIRLLRGFDRAAHFAAGGTPADWRGRSDVRPDKRKDGNRRACRGPVRDD |
| Ga0214917_1000006166 | F041160 | AGGAGG | MAKDIKVTEVVVVDGKPVVRGTVGEVPFEAATKQWGSKMLMNVAAEGLDRGTRIAIGHAAKRAVKAAQMVLPEAVLKRPRKAKAEEAVVEAAPAVEAVEGGVELESLDAALEAV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |