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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10000460 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 53354 |
| Total Scaffold Genes | 74 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 65 (87.84%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000166 | Metagenome / Metatranscriptome | 1810 | Y |
| F000340 | Metagenome / Metatranscriptome | 1267 | Y |
| F005294 | Metagenome | 405 | Y |
| F006016 | Metagenome | 383 | Y |
| F039525 | Metagenome | 163 | Y |
| F042295 | Metagenome | 158 | Y |
| F043830 | Metagenome | 155 | N |
| F054803 | Metagenome | 139 | Y |
| F073237 | Metagenome | 120 | Y |
| F082375 | Metagenome | 113 | N |
| F085338 | Metagenome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_1000046014 | F005294 | GAG | MANILNVSQVYDPRYHSFESWACLMVELYGAQNLSIPTPNTDWKEWAAGLKGIDVFTNEGIPGPYIYNDWQEWAEALVNAVNPAVN |
| Ga0214917_1000046019 | F082375 | GAG | MTPKQFVNELFGEDWKPSQLPIFLDQIKAWSEDAQRYYVVRDFAKPEFNENPRDRKECHEFDDLVDAKRFEQEL |
| Ga0214917_1000046020 | F043830 | N/A | MNPYLTPDDIKQAFFKIQLEENYNFLEEDLQNLADGFIMAAMPAIVKTERDMCIKFVNSLNTNVARALGEYRENL |
| Ga0214917_1000046025 | F054803 | GAG | MATNQEYEQWKNDPVEQQEYSKYLLEEAKKNSPILDEFINQFTSQFNEIFKEKS |
| Ga0214917_1000046026 | F073237 | GGA | MNLQDTIWYDTSKGRLGFLMVLDWNTEQLHYYAGIAEGMNENIDINHIYNGGMKLPDYVGMALFFGDSD |
| Ga0214917_1000046033 | F042295 | GGA | MALKNFSKFNKTEADEGPNNHNCFANGCPMAGSISTGGHWVCAYHHQSLPTEWPRVTESLRDCEKIRLAINEVMVIDMISWGAKVNGYPPKWQEFAALFDNEPELQPKEHEIIRKTKYEYRLRNELAIRAGLAKRKA |
| Ga0214917_1000046034 | F085338 | GAGG | MTKDEAQKILDQIREGFGNAYTEACAIECLYLTGDLGTHEAVRSTGVDETIREESYRARLRERAIVVGKSKE |
| Ga0214917_1000046042 | F000166 | AGG | MPNIPTPHDAAYFAQSVKKWQQILSLGDWRIEKGLKPAKQAMASVEFNDGARLATYRLGDWGSEKITPKSLERTALHELLHVFLHDLMTAAQDPKTSEDELEKQEHRIINLLEQLLTKDSHGIN |
| Ga0214917_1000046043 | F006016 | N/A | MTIATQIQTEALISTITSDIDALYVLDQQAKALAEQVKALKESIANKYGEGEHKGELHSVTVQLVQVSGTVDYKKLCISYGIGDEVLATFRKASRADIRVTPAK |
| Ga0214917_1000046046 | F039525 | GAG | MSDYIKGFDAGVDCVLTEIKRLEKIGPISLDQLLKHLDPQRDQKTAQKPEKGAP |
| Ga0214917_100004608 | F000340 | GGAG | MNWSDALKAVIPIVVMSLAWLLGQVNSFSERLTKIEGQMPALITKEGVPTDSPISAERRAIMKEQLMNHINELQVKVRLLEEREKLGKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |