NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10001519

Scaffold Ga0214917_10001519


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10001519 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29683
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (43.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007030Metagenome / Metatranscriptome359Y
F022396Metagenome / Metatranscriptome214Y
F034152Metagenome / Metatranscriptome175Y
F053148Metagenome / Metatranscriptome141N
F102858Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000151910F102858GGAMKLTDEQLSEALSVSEEHPVLKAMGQLIDDTLRDEVLNALLPSLSAEDRAYNSGRAAAIKDLIAQISALRNGRELTSGQF
Ga0214917_1000151914F007030GGAMTTTKAESPQMEDPFIYAPQPTSKAQAVTQAGTRPSIHVSLYAYGGISAACMMSWVDLTATFARSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWVQLDHDIEFSAADVIRMAELAHEHQATVCIPYSCRSLPARPALRPKAEHLQALKHQVNDAECAAELVPITMFASGCLAIPRKCLMATLDALGGSGVQSPYRIDWCDDVRVERFPTLWMPLAMESMPGKLEYLSEDYAAAVRMTLAGVKHLSMKPRKQLNHWGEFPYSFATYAG
Ga0214917_1000151915F053148N/AMMEAPQLVKIGVQRGWLSYPEGMAFKKDGTPDPVIQDEPEVTEQRHTPDMARKAYDLRDRGLSLNDVAKVCQVPRGSVVYLITKGHELYLANQRKNIEP
Ga0214917_100015195F034152N/AMRLGLGLGLGVEQALGGASGGADLPIIRRDLLREDEGFLWLEDGTSKIVITFGTFDSLDLENGDFLLQEDTGKLIIQAN
Ga0214917_100015196F022396AGAAGMNVGSNRQLAGEFGGWYIDASAGTVTGNWMEIHAVSTSILGAISSNITNFPAGVTIQAGDSISGVFTSVAVSSGAIIAYNRKWV
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