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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10001566 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29247 |
| Total Scaffold Genes | 68 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (29.41%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (10.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000962 | Metagenome / Metatranscriptome | 820 | Y |
| F002455 | Metagenome / Metatranscriptome | 557 | Y |
| F009264 | Metagenome / Metatranscriptome | 320 | N |
| F009682 | Metagenome / Metatranscriptome | 314 | Y |
| F018368 | Metagenome / Metatranscriptome | 235 | N |
| F048941 | Metagenome | 147 | Y |
| F065550 | Metagenome / Metatranscriptome | 127 | N |
| F085697 | Metagenome / Metatranscriptome | 111 | N |
| F090286 | Metagenome | 108 | N |
| F093750 | Metagenome | 106 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_1000156617 | F093750 | N/A | MKFKVSYYDFDTDKFVTKDCYRMSFYEGKFEFMPVDNPIRIYKSVSIDHPIVSISQNDTGFISISVVGYQHMKNGWYDKTTTKIENVRD |
| Ga0214917_1000156621 | F002455 | N/A | MTDNRTYYYDIYGKMEPDYESMAAYLLDESILFVGSAVDKCDKQECTGLFININDYFAPAADSEPVTYSELPKLYEMYKEKKYDGVSQFVADKRGIPNIYWKDKGSAFQKKFDLL |
| Ga0214917_1000156623 | F090286 | N/A | MNILNIFKKKPSEPEASKIETLLPEQHYVKISLEVEYLLDKQLYIYNTNYTIKAENEQLFNESKEKQVKILNAIIKDIHEKLDDKSSDYVCVGEAMLLKKSDFINARIVYNYKKDK |
| Ga0214917_1000156624 | F000962 | N/A | MNIHVPEEIKKKYPQYEFRGKRREINDRIVIEAYNPVTEQTFYYSFEEDFFWIAGQIPNYKLQKP |
| Ga0214917_1000156626 | F009264 | N/A | MRAYLEFSPMDDEVDHLIKIGFGAKILDAYEMENGFVAVVVDWNSKTDSHKLKYASQGCVTCSSDKIVGVELEFRDYPYKIDDCQMNPRISVKLDYDDFNKKMDYVCFQNLKYQAVVYFAPDSWNCSRKSKKIKF |
| Ga0214917_1000156631 | F009682 | GAG | MEKELYLKDKYVIESDDLKFDGKNIIIPSYYASIISDYLANVDLKDMNLNEADFHDYLAFCSFFEAIIDYKADKGGN |
| Ga0214917_1000156645 | F018368 | N/A | MTTTTLTTRGQKISNQIVSADVIEINQGPFSFTALTESILTEEDKIVIKYEVDGEMCNHEITNDMLNNAHVEDGHIVFAWAHQLSISLYKLSVVNAVE |
| Ga0214917_1000156656 | F065550 | N/A | MKMEIDTSDLTIPLRYYRGWDIEFTTRTEKFNSPLLCLYGFSCVADLEKAIDYALEKRAKAK |
| Ga0214917_1000156658 | F085697 | N/A | MNGELKITIQEVVDLRMALIHLERRIKQLIALEHKDWHKLYDLDIQSVEKGKQILKQIIQRD |
| Ga0214917_100015668 | F048941 | N/A | MSARCDIAKSVLDTAVRYYLPPSEIAELINNIFNNLDWDNRYPYTIEDVIVAAKSIVNDKYSSSNKKAYNKWLELHGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |