NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10001832

Scaffold Ga0214917_10001832


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10001832 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26934
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (74.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004761Metagenome / Metatranscriptome424Y
F057330Metagenome / Metatranscriptome136N
F073489Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000183213F057330GGAMRPVIVLWDDAYSEDEWMSVEHYNPKPETPNISIGYIVAYNNDYVHIASTIDQDGGNCCGIMAIPYDMIVYVAPLQILSEAKMYGDKEEFERYLQGKFAQRPEVYEFIEPAEISSETNPEPSV
Ga0214917_1000183227F073489AGGAGMTAISVGFELEDAGQCMPHLKGTTQALALEDIEELFRSYVREAGCEIMWQLLDDAGWNIGGKRFIECGGW
Ga0214917_100018324F004761AGCAGGMTMSLADVRTMVRNISDLDSVDLPNSIIDNAVKEAFQRIIALERRWPKYQETYTFNTVASQRPYTISTIGDIREVISLVDTSSAGSRLTMIPYDNAEDIWLGNTDVPSRPYFYAIWDAQLHLYPKPDAVYTITLRAYRNPVYTWLTNTSEAIDLDEWFHVLLAYFVLARVYQRQEDPELSAMYLRSFEEGVAMARRDLMKTPSARPLLMSGGRQYPTMRRWLQTLGATLGT
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